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  5. Smo139408

Smo139408


Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter


Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0002865 (LandPlants) Phylogenetic Tree(s): OG_05_0002865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo139408
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00145p00075460 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 Archaeplastida
AT2G36910 PGP1, ABCB1, ATPGP1 ATP binding cassette subfamily B1 0.02 Archaeplastida
AT2G39480 PGP6 P-glycoprotein 6 0.07 Archaeplastida
AT3G55320 PGP20 P-glycoprotein 20 0.01 Archaeplastida
GSVIVT01016617001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01025040001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Gb_20009 No alias subfamily ABCB transporter 0.06 Archaeplastida
Gb_31652 No alias subfamily ABCB transporter 0.07 Archaeplastida
LOC_Os01g74470.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
LOC_Os03g17180.1 No alias subfamily ABCB transporter 0.05 Archaeplastida
MA_14136g0010 No alias subfamily ABCB transporter 0.04 Archaeplastida
MA_40328g0010 No alias ABC transporter B family member 20 OS=Arabidopsis... 0.03 Archaeplastida
Solyc04g010310.4.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Solyc06g072960.1.1 No alias subfamily ABCB transporter 0.01 Archaeplastida
Zm00001e001258_P003 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e009632_P001 No alias subfamily ABCB transporter 0.01 Archaeplastida
Zm00001e018488_P001 No alias subfamily ABCB transporter 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1136 1284
No external refs found!