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  4. Sequence
  5. Smo140536

Smo140536


Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component


Gene families : OG0001187 (Archaeplastida) Phylogenetic Tree(s): OG0001187_tree ,
OG_05_0004019 (LandPlants) Phylogenetic Tree(s): OG_05_0004019_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo140536
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00084390 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 Archaeplastida
AMTR_s00071p00045940 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.1 Archaeplastida
AT3G07100 ERMO2, SEC24A Sec23/Sec24 protein transport family protein 0.07 Archaeplastida
AT3G44340 CEF clone eighty-four 0.02 Archaeplastida
AT4G32640 No alias Sec23/Sec24 protein transport family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000829.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 Archaeplastida
Cre01.g035850 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Cre02.g091150 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
GSVIVT01014261001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 Archaeplastida
GSVIVT01014611001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.07 Archaeplastida
Gb_11357 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
Gb_38621 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.03 Archaeplastida
LOC_Os04g04020.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.12 Archaeplastida
LOC_Os11g29200.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.06 Archaeplastida
LOC_Os12g24250.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.1 Archaeplastida
MA_10430919g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.03 Archaeplastida
MA_10434705g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.05 Archaeplastida
MA_45050g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
MA_923164g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.04 Archaeplastida
Mp7g13350.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
Mp7g13560.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.09 Archaeplastida
Pp3c1_17880V3.1 No alias Sec23/Sec24 protein transport family protein 0.04 Archaeplastida
Pp3c1_22750V3.1 No alias Sec23/Sec24 protein transport family protein 0.01 Archaeplastida
Pp3c1_22900V3.1 No alias clone eighty-four 0.04 Archaeplastida
Pp3c2_16660V3.1 No alias Sec23/Sec24 protein transport family protein 0.04 Archaeplastida
Solyc02g082220.3.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.06 Archaeplastida
Solyc06g084210.3.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.06 Archaeplastida
Zm00001e008766_P001 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.11 Archaeplastida
Zm00001e021459_P002 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.11 Archaeplastida
Zm00001e040573_P001 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.13 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006900 Sec23/24_helical_dom 725 821
No external refs found!