Species - Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Jump to ...
- Home
- Species
- Selaginella moellendorffii
- Sequence
- Smo146093
Smo146093
Description : Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN7 regulatory component
Gene families : OG0004847 (Archaeplastida) Phylogenetic Tree(s): OG0004847_tree ,
OG_05_0005237 (LandPlants) Phylogenetic Tree(s): OG_05_0005237_treeExpression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type Description Actions Neighborhood HRR: Smo146093 Cluster HCCA: Cluster_144
Expression Context Conservation (ECC)
Target Alias Description ECC score Gene Family Method Actions AMTR_s00049p00076930 evm_27.TU.AmTr_v1... Protein degradation.26S proteasome.regulatory... 0.03 Archaeplastida AT4G24820 No alias 26S proteasome, regulatory subunit Rpn7;Proteasome... 0.04 Archaeplastida Cpa|evm.model.tig00000615.75 No alias Protein degradation.26S proteasome.regulatory... 0.03 Archaeplastida Cre13.g581450 No alias Protein degradation.26S proteasome.regulatory... 0.03 Archaeplastida LOC_Os04g40850.1 No alias regulatory component RPN7 of 26S proteasome 0.08 Archaeplastida Mp1g10100.1 No alias regulatory component RPN7 of 26S proteasome 0.02 Archaeplastida Pp3c10_7470V3.1 No alias 26S proteasome, regulatory subunit Rpn7;Proteasome... 0.04 Archaeplastida Solyc07g009140.3.1 No alias regulatory component RPN7 of 26S proteasome 0.04 Archaeplastida Zm00001e007775_P001 No alias regulatory component RPN7 of 26S proteasome 0.05 Archaeplastida Zm00001e015028_P002 No alias regulatory component RPN7 of 26S proteasome 0.07 Archaeplastida
Functional Annotation
Type GO Term Name Evidence Source No GO annotation available for this sequence
Type GO Term Name Evidence Source MF GO:0003824 catalytic activity IEP Neighborhood MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood MF GO:0004834 tryptophan synthase activity IEP Neighborhood CC GO:0005575 cellular_component IEP Neighborhood CC GO:0005783 endoplasmic reticulum IEP Neighborhood CC GO:0005839 proteasome core complex IEP Neighborhood BP GO:0006334 nucleosome assembly IEP Neighborhood BP GO:0006399 tRNA metabolic process IEP Neighborhood BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood BP GO:0006486 protein glycosylation IEP Neighborhood BP GO:0006487 protein N-linked glycosylation IEP Neighborhood BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood BP GO:0007275 multicellular organism development IEP Neighborhood BP GO:0008150 biological_process IEP Neighborhood BP GO:0008152 metabolic process IEP Neighborhood MF GO:0008168 methyltransferase activity IEP Neighborhood BP GO:0009555 pollen development IEP Neighborhood BP GO:0009987 cellular process IEP Neighborhood MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood MF GO:0017076 purine nucleotide binding IEP Neighborhood BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood BP GO:0018196 peptidyl-asparagine modification IEP Neighborhood BP GO:0018279 protein N-linked glycosylation via asparagine IEP Neighborhood BP GO:0019725 cellular homeostasis IEP Neighborhood BP GO:0032501 multicellular organismal process IEP Neighborhood BP GO:0032502 developmental process IEP Neighborhood MF GO:0032553 ribonucleotide binding IEP Neighborhood MF GO:0032555 purine ribonucleotide binding IEP Neighborhood CC GO:0032991 protein-containing complex IEP Neighborhood BP GO:0034660 ncRNA metabolic process IEP Neighborhood BP GO:0034728 nucleosome organization IEP Neighborhood MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood BP GO:0042592 homeostatic process IEP Neighborhood BP GO:0043038 amino acid activation IEP Neighborhood BP GO:0043039 tRNA aminoacylation IEP Neighborhood CC GO:0043227 membrane-bounded organelle IEP Neighborhood CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood BP GO:0043413 macromolecule glycosylation IEP Neighborhood CC GO:0044424 intracellular part IEP Neighborhood CC GO:0044444 cytoplasmic part IEP Neighborhood CC GO:0044464 cell part IEP Neighborhood BP GO:0045454 cell redox homeostasis IEP Neighborhood BP GO:0048229 gametophyte development IEP Neighborhood BP GO:0048856 anatomical structure development IEP Neighborhood BP GO:0055114 oxidation-reduction process IEP Neighborhood BP GO:0065004 protein-DNA complex assembly IEP Neighborhood BP GO:0065008 regulation of biological quality IEP Neighborhood BP GO:0070085 glycosylation IEP Neighborhood BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood InterPro domains Description Start Stop IPR000717 PCI_dom 253 355 External LinksNo external refs found! Loading ... please wait ...
- Tools