1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo150370

Smo150370


Description : DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0003428 (LandPlants) Phylogenetic Tree(s): OG_05_0003428_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo150370
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.05 Archaeplastida
Cre02.g118300 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.01 Archaeplastida
MA_17924g0010 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.04 Archaeplastida
Pp3c2_2840V3.1 No alias DEAD box RNA helicase (RH3) 0.03 Archaeplastida
Solyc07g044760.3.1 No alias RNA helicase (PMH) 0.03 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e018107_P001 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e034728_P002 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046653 tetrahydrofolate metabolic process IEP Neighborhood
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 284 388
No external refs found!