Coexpression cluster: Cluster_3 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 25.26% (48/190) 1.1 0.0 6e-06
GO:0097367 carbohydrate derivative binding 8.95% (17/190) 2.19 0.0 6e-06
GO:1901265 nucleoside phosphate binding 9.47% (18/190) 2.13 0.0 6e-06
GO:0000166 nucleotide binding 9.47% (18/190) 2.13 0.0 6e-06
GO:0036094 small molecule binding 9.47% (18/190) 2.09 0.0 6e-06
GO:0032553 ribonucleotide binding 8.95% (17/190) 2.22 0.0 7e-06
GO:0017076 purine nucleotide binding 9.47% (18/190) 2.31 0.0 7e-06
GO:0051082 unfolded protein binding 2.63% (5/190) 5.03 0.0 7e-06
GO:0032555 purine ribonucleotide binding 8.95% (17/190) 2.24 0.0 7e-06
GO:0097159 organic cyclic compound binding 14.21% (27/190) 1.66 0.0 8e-06
GO:1901363 heterocyclic compound binding 14.21% (27/190) 1.66 0.0 8e-06
GO:0035639 purine ribonucleoside triphosphate binding 8.95% (17/190) 2.31 0.0 9e-06
GO:0030554 adenyl nucleotide binding 7.89% (15/190) 2.25 1e-06 1.4e-05
GO:0034660 ncRNA metabolic process 3.68% (7/190) 3.73 1e-06 1.7e-05
GO:0043168 anion binding 8.95% (17/190) 2.03 1e-06 1.8e-05
GO:0005524 ATP binding 7.37% (14/190) 2.23 2e-06 3e-05
GO:0008144 drug binding 7.37% (14/190) 2.17 3e-06 4.9e-05
GO:0032559 adenyl ribonucleotide binding 7.37% (14/190) 2.15 4e-06 5.1e-05
GO:0006399 tRNA metabolic process 3.16% (6/190) 3.82 4e-06 5.5e-05
GO:0043167 ion binding 11.05% (21/190) 1.54 1.2e-05 0.000155
GO:0006418 tRNA aminoacylation for protein translation 2.63% (5/190) 3.95 1.7e-05 0.000204
GO:0043039 tRNA aminoacylation 2.63% (5/190) 3.8 2.8e-05 0.000307
GO:0043038 amino acid activation 2.63% (5/190) 3.8 2.8e-05 0.000307
GO:0090304 nucleic acid metabolic process 4.74% (9/190) 2.44 4.5e-05 0.000473
GO:0016070 RNA metabolic process 4.21% (8/190) 2.58 6.2e-05 0.000626
GO:0004055 argininosuccinate synthase activity 1.05% (2/190) 6.87 7.2e-05 0.000698
GO:0006520 cellular amino acid metabolic process 2.63% (5/190) 3.34 0.000136 0.001217
GO:0003674 molecular_function 35.79% (68/190) 0.59 0.000135 0.001258
GO:0006325 chromatin organization 1.58% (3/190) 4.65 0.000207 0.001734
GO:0005839 proteasome core complex 1.58% (3/190) 4.65 0.000207 0.001734
GO:0003896 DNA primase activity 1.05% (2/190) 6.29 0.000216 0.001747
GO:0006139 nucleobase-containing compound metabolic process 4.74% (9/190) 2.0 0.000457 0.003587
GO:0006725 cellular aromatic compound metabolic process 4.74% (9/190) 1.88 0.00083 0.006314
GO:0046483 heterocycle metabolic process 4.74% (9/190) 1.83 0.001056 0.007792
GO:1901360 organic cyclic compound metabolic process 4.74% (9/190) 1.82 0.001132 0.008118
GO:0034641 cellular nitrogen compound metabolic process 4.74% (9/190) 1.73 0.001691 0.011789
GO:0016874 ligase activity 1.58% (3/190) 3.6 0.001893 0.012844
GO:0034728 nucleosome organization 1.05% (2/190) 4.7 0.002503 0.014956
GO:0071824 protein-DNA complex subunit organization 1.05% (2/190) 4.7 0.002503 0.014956
GO:0006334 nucleosome assembly 1.05% (2/190) 4.7 0.002503 0.014956
GO:0065004 protein-DNA complex assembly 1.05% (2/190) 4.7 0.002503 0.014956
GO:0043436 oxoacid metabolic process 2.63% (5/190) 2.39 0.002746 0.014985
GO:0051649 establishment of localization in cell 2.11% (4/190) 2.81 0.002582 0.015069
GO:0019752 carboxylic acid metabolic process 2.63% (5/190) 2.4 0.002642 0.015069
GO:0051641 cellular localization 2.11% (4/190) 2.79 0.002725 0.015199
GO:0006082 organic acid metabolic process 2.63% (5/190) 2.38 0.002854 0.015241
GO:0046907 intracellular transport 2.11% (4/190) 2.85 0.002311 0.015262
GO:0140098 catalytic activity, acting on RNA 2.11% (4/190) 2.74 0.003028 0.015832
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.05% (2/190) 4.17 0.005302 0.02716
GO:0140101 catalytic activity, acting on a tRNA 1.05% (2/190) 4.07 0.006151 0.030879
GO:0004827 proline-tRNA ligase activity 0.53% (1/190) 6.87 0.008526 0.035082
GO:0030488 tRNA methylation 0.53% (1/190) 6.87 0.008526 0.035082
GO:0006400 tRNA modification 0.53% (1/190) 6.87 0.008526 0.035082
GO:0043413 macromolecule glycosylation 0.53% (1/190) 6.87 0.008526 0.035082
GO:0006486 protein glycosylation 0.53% (1/190) 6.87 0.008526 0.035082
GO:0006487 protein N-linked glycosylation 0.53% (1/190) 6.87 0.008526 0.035082
GO:0070085 glycosylation 0.53% (1/190) 6.87 0.008526 0.035082
GO:0018196 peptidyl-asparagine modification 0.53% (1/190) 6.87 0.008526 0.035082
GO:0018279 protein N-linked glycosylation via asparagine 0.53% (1/190) 6.87 0.008526 0.035082
GO:0017111 nucleoside-triphosphatase activity 2.63% (5/190) 2.02 0.008152 0.039348
GO:0032991 protein-containing complex 2.63% (5/190) 2.02 0.008152 0.039348
GO:0001882 nucleoside binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0005525 GTP binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0032561 guanyl ribonucleotide binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0032550 purine ribonucleoside binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0032549 ribonucleoside binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0001883 purine nucleoside binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0019001 guanyl nucleotide binding 1.58% (3/190) 2.7 0.011002 0.039449
GO:0006396 RNA processing 1.58% (3/190) 2.76 0.009924 0.03954
GO:0016462 pyrophosphatase activity 2.63% (5/190) 1.95 0.009874 0.039973
GO:0016779 nucleotidyltransferase activity 1.58% (3/190) 2.65 0.012144 0.042335
GO:0034470 ncRNA processing 1.05% (2/190) 3.55 0.01242 0.042705
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.63% (5/190) 1.87 0.012131 0.042884
GO:0016817 hydrolase activity, acting on acid anhydrides 2.63% (5/190) 1.86 0.012745 0.043229
GO:0032040 small-subunit processome 0.53% (1/190) 5.87 0.01698 0.04843
GO:0034457 Mpp10 complex 0.53% (1/190) 5.87 0.01698 0.04843
GO:0043044 ATP-dependent chromatin remodeling 0.53% (1/190) 5.87 0.01698 0.04843
GO:0044452 nucleolar part 0.53% (1/190) 5.87 0.01698 0.04843
GO:0001510 RNA methylation 0.53% (1/190) 5.87 0.01698 0.04843
GO:0004834 tryptophan synthase activity 0.53% (1/190) 5.87 0.01698 0.04843
GO:0060590 ATPase regulator activity 0.53% (1/190) 5.87 0.01698 0.04843
GO:0000774 adenyl-nucleotide exchange factor activity 0.53% (1/190) 5.87 0.01698 0.04843
GO:0003887 DNA-directed DNA polymerase activity 0.53% (1/190) 5.87 0.01698 0.04843
GO:0005515 protein binding 8.95% (17/190) 0.81 0.017296 0.048779
GO:0009987 cellular process 10.53% (20/190) 0.73 0.017639 0.049192
GO:0044281 small molecule metabolic process 2.63% (5/190) 1.79 0.015413 0.049599
GO:0016772 transferase activity, transferring phosphorus-containing groups 2.11% (4/190) 2.0 0.018 0.049649
GO:0006928 movement of cell or subcellular component 1.58% (3/190) 2.53 0.015288 0.049834
GO:0007018 microtubule-based movement 1.58% (3/190) 2.53 0.015288 0.049834
GO:0034622 cellular protein-containing complex assembly 1.05% (2/190) 3.41 0.014933 0.049976
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_22 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_43 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_58 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_109 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.053 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_134 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_179 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.043 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_44 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_60 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.046 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.033 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.047 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_70 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.03 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_152 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_153 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_155 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_22 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.044 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_184 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_264 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_315 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_329 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_335 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_1 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.066 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.058 Archaeplastida Compare
Zea mays HCCA Cluster_65 0.037 Archaeplastida Compare
Zea mays HCCA Cluster_72 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_115 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_136 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_261 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_277 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_285 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.045 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_3 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_13 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_20 0.037 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.041 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_36 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_69 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_84 0.032 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_6 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_11 0.041 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.044 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_112 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.053 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_218 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_222 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_290 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.053 Archaeplastida Compare
Picea abies HCCA Cluster_169 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_379 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.04 Archaeplastida Compare
Picea abies HCCA Cluster_486 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_531 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.098 Archaeplastida Compare
Oryza sativa HCCA Cluster_164 0.032 Archaeplastida Compare
Oryza sativa HCCA Cluster_166 0.034 Archaeplastida Compare
Oryza sativa HCCA Cluster_173 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_204 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_215 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_9 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_29 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_144 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_77 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_79 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.067 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.037 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_228 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_256 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_277 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_284 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_1 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_53 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.05 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_146 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.036 Archaeplastida Compare
Vitis vinifera HCCA Cluster_179 0.043 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_242 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_10 0.031 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_21 0.043 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_25 0.03 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_50 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.04 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.03 Archaeplastida Compare
Sequences (190) (download table)

InterPro Domains

GO Terms

Family Terms