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  5. AMTR_s00013p00224030

AMTR_s00013p00224030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.163

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL17 component


Gene families : OG0001876 (Archaeplastida) Phylogenetic Tree(s): OG0001876_tree ,
OG_05_0001644 (LandPlants) Phylogenetic Tree(s): OG_05_0001644_tree ,
OG_06_0001980 (SeedPlants) Phylogenetic Tree(s): OG_06_0001980_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00224030
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT1G27400 No alias Ribosomal protein L22p/L17e family protein 0.22 Archaeplastida
AT1G67430 No alias Ribosomal protein L22p/L17e family protein 0.11 Archaeplastida
Cpa|evm.model.tig00001215.8 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Cre13.g568900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
GSVIVT01008528001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01010449001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
GSVIVT01010450001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
LOC_Os08g41810.1 No alias component RPL17 of LSU proteome component 0.11 Archaeplastida
LOC_Os09g08430.1 No alias component RPL17 of LSU proteome component 0.15 Archaeplastida
MA_10430182g0010 No alias component RPL17 of LSU proteome component 0.13 Archaeplastida
MA_64923g0010 No alias component RPL17 of LSU proteome component 0.15 Archaeplastida
Mp1g10230.1 No alias component RPL17 of LSU proteome component 0.21 Archaeplastida
Pp3c11_5840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.18 Archaeplastida
Pp3c1_6650V3.1 No alias Ribosomal protein L22p/L17e family protein 0.1 Archaeplastida
Pp3c2_29840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.18 Archaeplastida
Pp3c7_25220V3.1 No alias Ribosomal protein L22p/L17e family protein 0.1 Archaeplastida
Pp3c7_25240V3.1 No alias Ribosomal protein L22p/L17e family protein 0.21 Archaeplastida
Smo96251 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Solyc03g111230.4.1 No alias component RPL17 of LSU proteome component 0.03 Archaeplastida
Solyc06g071870.3.1 No alias component RPL17 of LSU proteome component 0.17 Archaeplastida
Solyc06g071880.4.1 No alias component RPL17 of LSU proteome component 0.15 Archaeplastida
Zm00001e003661_P001 No alias component RPL17 of LSU proteome component 0.17 Archaeplastida
Zm00001e005470_P001 No alias component RPL17 of LSU proteome component 0.04 Archaeplastida
Zm00001e021953_P003 No alias component RPL17 of LSU proteome component 0.12 Archaeplastida
Zm00001e026882_P002 No alias component RPL17 of LSU proteome component 0.1 Archaeplastida
Zm00001e031261_P001 No alias component RPL17 of LSU proteome component 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 153
No external refs found!