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  4. Sequence
  5. Smo164298

Smo164298


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL28 component


Gene families : OG0003075 (Archaeplastida) Phylogenetic Tree(s): OG0003075_tree ,
OG_05_0003467 (LandPlants) Phylogenetic Tree(s): OG_05_0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo164298
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00210210 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
AT2G19730 No alias Ribosomal L28e protein family 0.13 Archaeplastida
AT4G29410 No alias Ribosomal L28e protein family 0.15 Archaeplastida
Cpa|evm.model.tig00020710.93 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Cre11.g467578 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
GSVIVT01016895001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01035350001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Gb_38783 No alias component RPL28 of LSU proteome component 0.11 Archaeplastida
LOC_Os02g57540.1 No alias component RPL28 of LSU proteome component 0.17 Archaeplastida
LOC_Os05g46430.1 No alias component RPL28 of LSU proteome component 0.14 Archaeplastida
MA_10428490g0010 No alias component RPL28 of LSU proteome component 0.14 Archaeplastida
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.15 Archaeplastida
Pp3c14_10480V3.1 No alias Ribosomal L28e protein family 0.14 Archaeplastida
Pp3c17_14060V3.1 No alias Ribosomal L28e protein family 0.19 Archaeplastida
Pp3c1_29070V3.1 No alias Ribosomal L28e protein family 0.13 Archaeplastida
Pp3c2_6100V3.1 No alias Ribosomal L28e protein family 0.14 Archaeplastida
Solyc03g121330.3.1 No alias component RPL28 of LSU proteome component 0.11 Archaeplastida
Solyc06g062500.4.1 No alias component RPL28 of LSU proteome component 0.11 Archaeplastida
Solyc12g044720.2.1
 No alias component RPL28 of LSU proteome component 0.06 Archaeplastida
Zm00001e026410_P001 No alias component RPL28 of LSU proteome component 0.12 Archaeplastida
Zm00001e032283_P002 No alias component RPL28 of LSU proteome component 0.16 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 6 126
No external refs found!