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  5. Smo168054

Smo168054


Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1G large gamma subunit


Gene families : OG0003646 (Archaeplastida) Phylogenetic Tree(s): OG0003646_tree ,
OG_05_0003827 (LandPlants) Phylogenetic Tree(s): OG_05_0003827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo168054
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT1G23900 GAMMA-ADAPTIN 1,... gamma-adaptin 1 0.04 Archaeplastida
AT1G60070 No alias Adaptor protein complex AP-1, gamma subunit 0.06 Archaeplastida
Cpa|evm.model.tig00000217.33 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 Archaeplastida
Cre16.g676650 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 Archaeplastida
GSVIVT01020209001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.1 Archaeplastida
Gb_02741 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 Archaeplastida
LOC_Os02g56110.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 Archaeplastida
LOC_Os06g07090.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.12 Archaeplastida
MA_10432717g0010 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 Archaeplastida
Mp2g02140.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 Archaeplastida
Pp3c17_4870V3.1 No alias Adaptor protein complex AP-1, gamma subunit 0.02 Archaeplastida
Pp3c26_590V3.1 No alias Adaptor protein complex AP-1, gamma subunit 0.07 Archaeplastida
Solyc04g025870.4.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.07 Archaeplastida
Solyc05g005780.3.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.11 Archaeplastida
Zm00001e023661_P002 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 Archaeplastida
Zm00001e030101_P002 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.12 Archaeplastida
Zm00001e036396_P001 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 15 566
No external refs found!