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  5. Smo169717

Smo169717


Description : Protein biosynthesis.translation elongation.eEF1A aminoacyl-tRNA binding factor


Gene families : OG0000191 (Archaeplastida) Phylogenetic Tree(s): OG0000191_tree ,
OG_05_0000317 (LandPlants) Phylogenetic Tree(s): OG_05_0000317_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo169717
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00216110 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.03 Archaeplastida
AT1G07920 No alias GTP binding Elongation factor Tu family protein 0.03 Archaeplastida
AT5G60390 No alias GTP binding Elongation factor Tu family protein 0.06 Archaeplastida
Cre06.g284750 No alias Protein biosynthesis.translation termination.eRF3... 0.01 Archaeplastida
Gb_17471 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
LOC_Os01g02720.2 No alias EXO9-SUPERKILLER interaction factor (SKI7). GTPase... 0.02 Archaeplastida
LOC_Os03g08010.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.05 Archaeplastida
LOC_Os03g08020.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
LOC_Os03g08050.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.02 Archaeplastida
Mp6g17700.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.02 Archaeplastida
Pp3c1_23850V3.1 No alias GTP binding Elongation factor Tu family protein 0.05 Archaeplastida
Pp3c1_23900V3.1 No alias GTP binding Elongation factor Tu family protein 0.02 Archaeplastida
Pp3c1_23920V3.1 No alias GTP binding Elongation factor Tu family protein 0.05 Archaeplastida
Pp3c2_6160V3.1 No alias GTP binding Elongation factor Tu family protein 0.03 Archaeplastida
Pp3c2_6650V3.1 No alias GTP binding Elongation factor Tu family protein 0.02 Archaeplastida
Pp3c2_6690V3.1 No alias GTP binding Elongation factor Tu family protein 0.02 Archaeplastida
Pp3c2_6770V3.1 No alias GTP binding Elongation factor Tu family protein 0.03 Archaeplastida
Pp3c5_28870V3.1 No alias Translation elongation factor EF1A/initiation factor... 0.02 Archaeplastida
Solyc06g005060.3.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Solyc11g150146.1.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Zm00001e026762_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Zm00001e026763_P003 No alias aminoacyl-tRNA binding factor (eEF1A) 0.06 Archaeplastida
Zm00001e030598_P002 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
Zm00001e031390_P004 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Zm00001e031391_P002 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
Zm00001e031407_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
Zm00001e040640_P002 No alias eRF3 peptide release factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018196 peptidyl-asparagine modification IEP Neighborhood
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
No external refs found!