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  5. Smo170207

Smo170207


Description : Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component


Gene families : OG0003828 (Archaeplastida) Phylogenetic Tree(s): OG0003828_tree ,
OG_05_0004100 (LandPlants) Phylogenetic Tree(s): OG_05_0004100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo170207
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00682p00010920 evm_27.TU.AmTr_v1... Chromatin organisation.histone chaperone activities.FACT... 0.03 Archaeplastida
GSVIVT01031306001 No alias Chromatin organisation.histone chaperone activities.FACT... 0.05 Archaeplastida
LOC_Os04g25550.1 No alias component SPT16 of FACT histone chaperone complex 0.03 Archaeplastida
LOC_Os12g26030.1 No alias component SPT16 of FACT histone chaperone complex 0.02 Archaeplastida
MA_10430230g0030 No alias component SPT16 of FACT histone chaperone complex 0.04 Archaeplastida
Mp1g28760.1 No alias component SPT16 of FACT histone chaperone complex 0.04 Archaeplastida
Pp3c13_15990V3.1 No alias global transcription factor C 0.02 Archaeplastida
Solyc01g101020.4.1 No alias component SPT16 of FACT histone chaperone complex 0.05 Archaeplastida
Zm00001e013464_P001 No alias component SPT16 of FACT histone chaperone complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009235 cobalamin metabolic process IEP Neighborhood
BP GO:0009236 cobalamin biosynthetic process IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000994 Pept_M24 199 431
No external refs found!