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Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor
Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0103676 (LandPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo181406 | |
| Cluster | HCCA: Cluster_216 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00211p00025860 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.B3... | 0.02 | Archaeplastida | |
| AT1G30330 | ARF6 | auxin response factor 6 | 0.02 | Archaeplastida | |
| AT1G59750 | ARF1 | auxin response factor 1 | 0.02 | Archaeplastida | |
| GSVIVT01003591001 | No alias | No description available | 0.02 | Archaeplastida | |
| GSVIVT01004942001 | No alias | RNA biosynthesis.transcriptional activation.B3... | 0.02 | Archaeplastida | |
| GSVIVT01032251001 | No alias | RNA biosynthesis.transcriptional activation.B3... | 0.03 | Archaeplastida | |
| Gb_32864 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
| LOC_Os04g56850.1 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
| LOC_Os04g57610.1 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
| LOC_Os12g29520.1 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
| Pp3c26_11550V3.1 | No alias | auxin response factor 6 | 0.02 | Archaeplastida | |
| Pp3c2_25890V3.1 | No alias | auxin response factor 6 | 0.02 | Archaeplastida | |
| Solyc06g075150.3.1 | No alias | transcription factor (ARF) | 0.01 | Archaeplastida | |
| Solyc07g016180.3.1 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
| Zm00001e003591_P003 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
| Zm00001e013639_P001 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | Neighborhood |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Neighborhood |
| MF | GO:0004645 | phosphorylase activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0005985 | sucrose metabolic process | IEP | Neighborhood |
| BP | GO:0005986 | sucrose biosynthetic process | IEP | Neighborhood |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0006013 | mannose metabolic process | IEP | Neighborhood |
| MF | GO:0008184 | glycogen phosphorylase activity | IEP | Neighborhood |
| MF | GO:0008374 | O-acyltransferase activity | IEP | Neighborhood |
| MF | GO:0008483 | transaminase activity | IEP | Neighborhood |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Neighborhood |
| BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Neighborhood |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Neighborhood |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Neighborhood |
| BP | GO:0019318 | hexose metabolic process | IEP | Neighborhood |
| BP | GO:0019321 | pentose metabolic process | IEP | Neighborhood |
| BP | GO:0019566 | arabinose metabolic process | IEP | Neighborhood |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Neighborhood |
| BP | GO:0046351 | disaccharide biosynthetic process | IEP | Neighborhood |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | Neighborhood |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003340 | B3_DNA-bd | 119 | 220 |
| No external refs found! |