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  5. Smo230356

Smo230356


Description : Laccase-4 OS=Oryza sativa subsp. japonica


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo230356
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00245710 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
AT2G46570 LAC6 laccase 6 0.03 Archaeplastida
AT3G09220 LAC7 laccase 7 0.03 Archaeplastida
AT5G48100 TT10, LAC15, ATLAC15 Laccase/Diphenol oxidase family protein 0.02 Archaeplastida
GSVIVT01001604001 No alias Laccase-14 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01001614001 No alias Laccase-14 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01024795001 No alias Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
GSVIVT01025046001 No alias Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
GSVIVT01025077001 No alias Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
GSVIVT01033501001 No alias Laccase-11 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01034003001 No alias Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
GSVIVT01034137001 No alias Cell wall.lignin.monolignol conjugation and... 0.02 Archaeplastida
Gb_14614 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_34469 No alias Laccase-12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_186173g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_21316g0010 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.01 Archaeplastida
MA_33288g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_66348g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Smo78404 No alias Laccase-12 OS=Arabidopsis thaliana 0.06 Archaeplastida
Zm00001e015854_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e019315_P001 No alias lignin laccase 0.02 Archaeplastida
Zm00001e019412_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Zm00001e023886_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e028830_P002 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e039529_P002 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 31 144
No external refs found!