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  5. Smo237023

Smo237023


Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.RpoB core component


Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo237023
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
ATCG00190 RPOB RNA polymerase subunit beta 0.03 Archaeplastida
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.02 Archaeplastida
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.06 Archaeplastida
Mp1g13170.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.03 Archaeplastida
Mp6g21490.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo139200 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
InterPro domains Description Start Stop
IPR007642 RNA_pol_Rpb2_2 120 302
No external refs found!