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  5. AMTR_s00017p00207950

AMTR_s00017p00207950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.130

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.MAC5 component


Gene families : OG0003787 (Archaeplastida) Phylogenetic Tree(s): OG0003787_tree ,
OG_05_0004047 (LandPlants) Phylogenetic Tree(s): OG_05_0004047_tree ,
OG_06_0005206 (SeedPlants) Phylogenetic Tree(s): OG_06_0005206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00207950
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G07360 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.03 Archaeplastida
Solyc04g017710.3.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.02 Archaeplastida
Solyc10g079190.3.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 229 286
No external refs found!