AMTR_s00017p00244900 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.226

Description : Floral homeotic protein PMADS 2 OS=Petunia hybrida

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00017p00244900
Cluster	HCCA: Cluster_226

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AT1G77950	AGL67	AGAMOUS-like 67	0.02	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.05	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.02	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01009171001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012249001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018839001	No alias	Floral homeotic protein DEFICIENS OS=Antirrhinum majus	0.03	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Gb_05359	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os01g66030.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os01g66290.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g11380.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g11970.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os10g39130.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_126898g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_138440g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_16120g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_1767g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_276701g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c1_39760V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Smo85851	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.06	Archaeplastida
Solyc02g071730.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g084630.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc03g019710.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc11g028020.3.1	No alias	No annotation	0.03	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc12g056460.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003995	acyl-CoA dehydrogenase activity	IEP	Neighborhood
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Neighborhood
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006541	glutamine metabolic process	IEP	Neighborhood
BP	GO:0006542	glutamine biosynthetic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006635	fatty acid beta-oxidation	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016833	oxo-acid-lyase activity	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
BP	GO:0019395	fatty acid oxidation	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0034440	lipid oxidation	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	1	72

External Links

No external refs found!

AMTR_s00017p00244900 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation