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  5. AMTR_s00019p00029530

AMTR_s00019p00029530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.8

Description : ATP synthase subunit beta, chloroplastic OS=Amborella trichopoda


Gene families : OG0000722 (Archaeplastida) Phylogenetic Tree(s): OG0000722_tree ,
OG_05_0001384 (LandPlants) Phylogenetic Tree(s): OG_05_0001384_tree ,
OG_06_0000778 (SeedPlants) Phylogenetic Tree(s): OG_06_0000778_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00029530
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g55874.1 No alias subunit epsilon of peripheral CF1 subcomplex of ATP... 0.02 Archaeplastida
LOC_Os10g21266.1 No alias subunit beta of peripheral CF1 subcomplex of ATP synthase complex 0.02 Archaeplastida
LOC_Os12g10570.1 No alias ATP synthase subunit beta, chloroplastic OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e003901_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042030_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042068_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042081_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042082_P001 No alias ATP synthase subunit beta, chloroplastic OS=Zea mays... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000194 ATPase_F1/V1/A1_a/bsu_nucl-bd 75 206
No external refs found!