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  5. Smo440805

Smo440805


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS13 component


Gene families : OG0001993 (Archaeplastida) Phylogenetic Tree(s): OG0001993_tree ,
OG_05_0001936 (LandPlants) Phylogenetic Tree(s): OG_05_0001936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo440805
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00029190 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AMTR_s00109p00088200 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AT3G60770 No alias Ribosomal protein S13/S15 0.17 Archaeplastida
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.15 Archaeplastida
Cpa|evm.model.tig00000489.15 No alias 40S ribosomal protein S13 OS=Glycine max 0.06 Archaeplastida
Cre07.g331900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
GSVIVT01018537001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
GSVIVT01027637001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Gb_18181 No alias component RPS13 of SSU proteome 0.1 Archaeplastida
Gb_34582 No alias component RPS13 of SSU proteome 0.09 Archaeplastida
LOC_Os07g38540.1 No alias component RPS13 of SSU proteome 0.05 Archaeplastida
LOC_Os08g02400.1 No alias component RPS13 of SSU proteome 0.13 Archaeplastida
LOC_Os08g02410.1 No alias component RPS13 of SSU proteome 0.21 Archaeplastida
MA_141232g0010 No alias component RPS13 of SSU proteome 0.09 Archaeplastida
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.19 Archaeplastida
Pp3c11_1100V3.1 No alias ribosomal protein S13A 0.21 Archaeplastida
Pp3c16_15220V3.1 No alias ribosomal protein S13A 0.08 Archaeplastida
Pp3c7_26720V3.1 No alias ribosomal protein S13A 0.17 Archaeplastida
Solyc01g091220.3.1 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
Solyc03g083530.3.1 No alias component RPS13 of SSU proteome 0.06 Archaeplastida
Solyc05g051000.3.1 No alias component RPS13 of SSU proteome 0.08 Archaeplastida
Solyc10g018250.2.1 No alias component RPS13 of SSU proteome 0.1 Archaeplastida
Solyc11g072260.2.1 No alias component RPS13 of SSU proteome 0.17 Archaeplastida
Zm00001e021837_P003 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
Zm00001e021839_P001 No alias component RPS13 of SSU proteome 0.21 Archaeplastida
Zm00001e029210_P002 No alias component RPS13 of SSU proteome 0.19 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 78 147
No external refs found!