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  5. AMTR_s00019p00093260

AMTR_s00019p00093260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.69

Description : Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0006821 (Archaeplastida) Phylogenetic Tree(s): OG0006821_tree ,
OG_05_0009059 (LandPlants) Phylogenetic Tree(s): OG_05_0009059_tree ,
OG_06_0009047 (SeedPlants) Phylogenetic Tree(s): OG_06_0009047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00093260
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00145740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g15510,... 0.05 Archaeplastida
AMTR_s00049p00220350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g02980,... 0.03 Archaeplastida
AMTR_s00059p00175950 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s00092p00099090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s01859p00006880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
Solyc02g072010.3.1 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 330 348
IPR002885 Pentatricopeptide_repeat 201 226
IPR002885 Pentatricopeptide_repeat 171 199
IPR002885 Pentatricopeptide_repeat 299 328
IPR002885 Pentatricopeptide_repeat 270 297
IPR002885 Pentatricopeptide_repeat 75 124
No external refs found!