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  5. Smo80412

Smo80412


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000030 (LandPlants) Phylogenetic Tree(s): OG_05_0000030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo80412
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.03 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
AMTR_s00232p00000850 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g21090... 0.02 Archaeplastida
GSVIVT01010869001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_08619 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_13599 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_20456 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_33061 No alias RNA editing factor (MEF3) 0.04 Archaeplastida
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_117650g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.02 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo100125 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.04 Archaeplastida
Smo101 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo105033 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
Smo123450 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo124564 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
Smo126928 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo55271 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo79457 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Smo80739 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Smo87961 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo88697 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo93575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Smo97343 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Smo98388 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Smo99993 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc03g051780.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc03g116840.3.1 No alias RNA editing factor (OTP81) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 194 242
No external refs found!