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  5. Solyc01g008970.4.1

Solyc01g008970.4.1


Description : UBP1-associated protein 2A OS=Arabidopsis thaliana (sp|q9les2|uba2a_arath : 281.0)


Gene families : OG0000953 (Archaeplastida) Phylogenetic Tree(s): OG0000953_tree ,
OG_05_0000628 (LandPlants) Phylogenetic Tree(s): OG_05_0000628_tree ,
OG_06_0000928 (SeedPlants) Phylogenetic Tree(s): OG_06_0000928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g008970.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00040700 evm_27.TU.AmTr_v1... UBP1-associated protein 2A OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01037491001 No alias UBP1-associated protein 2A OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_04917 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_32165 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_129986g0010 No alias UBP1-associated protein 2B OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_158497g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_287080g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_3634858g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8212g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp4g08960.1 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 256 325
IPR000504 RRM_dom 158 220
No external refs found!