Solyc01g012670.3.1

Description : Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana (sp|q3ebc8|dcl2_arath : 95.9)

Gene families : OG0006875 (Archaeplastida) Phylogenetic Tree(s): OG0006875_tree ,
OG_05_0004792 (LandPlants) Phylogenetic Tree(s): OG_05_0004792_tree ,
OG_06_0003123 (SeedPlants) Phylogenetic Tree(s): OG_06_0003123_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g012670.3.1
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
Solyc01g011520.2.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g012550.1.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc01g012590.1.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Solyc01g012610.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g012680.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc01g013790.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g013810.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g013860.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g013920.1.1	No alias	Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004568	chitinase activity	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	13	181

External Links

No external refs found!

Solyc01g012670.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation