AMTR_s00021p00189010 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.149

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.WOX transcription factor

Gene families : OG0000425 (Archaeplastida) Phylogenetic Tree(s): OG0000425_tree ,
OG_05_0000212 (LandPlants) Phylogenetic Tree(s): OG_05_0000212_tree ,
OG_06_0001039 (SeedPlants) Phylogenetic Tree(s): OG_06_0001039_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00021p00189010
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
AT2G28610	WOX3, PRS1, PRS	Homeodomain-like superfamily protein	0.05	Archaeplastida
AT2G33880	STIP, HB-3, WOX9	homeobox-3	0.05	Archaeplastida
AT3G03660	WOX11	WUSCHEL related homeobox 11	0.03	Archaeplastida
AT3G11260	WOX5	WUSCHEL related homeobox 5	0.02	Archaeplastida
AT3G18010	WOX1	WUSCHEL related homeobox 1	0.03	Archaeplastida
AT5G59340	WOX2	WUSCHEL related homeobox 2	0.04	Archaeplastida
Gb_27283	No alias	transcription factor (WOX)	0.04	Archaeplastida
LOC_Os03g20910.1	No alias	transcription factor (WOX)	0.02	Archaeplastida
LOC_Os05g02730.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
LOC_Os05g48990.1	No alias	transcription factor (WOX)	0.05	Archaeplastida
LOC_Os07g48560.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
Solyc02g077390.2.1	No alias	transcription factor (WOX)	0.11	Archaeplastida
Solyc02g083950.3.1	No alias	transcription factor (WOX)	0.04	Archaeplastida
Solyc03g118770.4.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
Solyc11g072770.2.1	No alias	transcription factor (WOX)	0.03	Archaeplastida
Zm00001e001527_P001	No alias	transcription factor (WOX)	0.02	Archaeplastida
Zm00001e024169_P001	No alias	transcription factor (WOX)	0.1	Archaeplastida
Zm00001e029534_P001	No alias	transcription factor (WOX)	0.02	Archaeplastida
Zm00001e032433_P003	No alias	transcription factor (WOX)	0.04	Archaeplastida
Zm00001e038272_P001	No alias	transcription factor (WOX)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	45	105

External Links

No external refs found!

AMTR_s00021p00189010 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation