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  5. Solyc01g079330.3.1

Solyc01g079330.3.1


Description : DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana (sp|o22907|rh24_arath : 1002.0)


Gene families : OG0007523 (Archaeplastida) Phylogenetic Tree(s): OG0007523_tree ,
OG_05_0008076 (LandPlants) Phylogenetic Tree(s): OG_05_0008076_tree ,
OG_06_0010194 (SeedPlants) Phylogenetic Tree(s): OG_06_0010194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g079330.3.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01028137001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_12460 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os03g19530.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.03 Archaeplastida
MA_50249g0010 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.03 Archaeplastida
Mp4g12240.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.05 Archaeplastida
Pp3c1_21470V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c2_16950V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Zm00001e001454_P001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e038325_P002 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 473 569
IPR011545 DEAD/DEAH_box_helicase_dom 253 424
No external refs found!