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  5. Solyc01g089870.3.1

Solyc01g089870.3.1


Description : Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana (sp|q8lps6|ppr3_arath : 622.0)


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0010817 (SeedPlants) Phylogenetic Tree(s): OG_06_0010817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g089870.3.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.06 Archaeplastida
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.08 Archaeplastida
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.02 Archaeplastida
AMTR_s00135p00094680 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27460... 0.03 Archaeplastida
AT1G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT1G15480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.12 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 Archaeplastida
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 Archaeplastida
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.08 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.01 Archaeplastida
LOC_Os04g46010.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.06 Archaeplastida
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.06 Archaeplastida
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.06 Archaeplastida
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.07 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.03 Archaeplastida
Zm00001e007372_P001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.14 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 313
IPR002885 Pentatricopeptide_repeat 362 384
IPR002885 Pentatricopeptide_repeat 398 424
IPR002885 Pentatricopeptide_repeat 204 265
No external refs found!