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  5. Solyc01g091770.4.1

Solyc01g091770.4.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0003924 (LandPlants) Phylogenetic Tree(s): OG_05_0003924_tree ,
OG_06_0005596 (SeedPlants) Phylogenetic Tree(s): OG_06_0005596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g091770.4.1
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00221710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00056p00124480 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT3G11110 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_05385 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Gb_39473 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os05g07140.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os05g40020.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os10g39936.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os12g24530.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_19072g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp2g11860.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c14_14600V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c1_20780V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc07g006360.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e017959_P001 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006000 fructose metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 87 130
No external refs found!