1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g094000.3.1

Solyc01g094000.3.1


Description : uridylyltransferase (URT1)


Gene families : OG0004589 (Archaeplastida) Phylogenetic Tree(s): OG0004589_tree ,
OG_05_0004848 (LandPlants) Phylogenetic Tree(s): OG_05_0004848_tree ,
OG_06_0005026 (SeedPlants) Phylogenetic Tree(s): OG_06_0005026_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g094000.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01027570001 No alias RNA processing.RNA modification.uridylation.URT1... 0.03 Archaeplastida
LOC_Os02g02970.1 No alias uridylyltransferase (URT1) 0.01 Archaeplastida
Mp8g15550.1 No alias uridylyltransferase (URT1) 0.04 Archaeplastida
Smo100054 No alias RNA processing.RNA modification.uridylation.URT1... 0.03 Archaeplastida
Zm00001e012928_P001 No alias UTP:RNA uridylyltransferase 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031023 microtubule organizing center organization IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 484 568
IPR002058 PAP_assoc 674 733
No external refs found!