1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g096290.4.1

Solyc01g096290.4.1


Description : no hits & (original description: none)


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096290.4.1
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.04 Archaeplastida
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.19 Archaeplastida
AT2G47110 UBQ6 ubiquitin 6 0.21 Archaeplastida
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.18 Archaeplastida
AT3G62250 UBQ5 ubiquitin 5 0.18 Archaeplastida
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Cre06.g273600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
GSVIVT01012906001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01022543001 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum 0.05 Archaeplastida
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
Gb_01257 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.2 Archaeplastida
Gb_40288 No alias component RPS27a of SSU proteome 0.16 Archaeplastida
Gb_41257 No alias component RPL40 of LSU proteome component 0.18 Archaeplastida
LOC_Os01g22490.1 No alias component RPS27a of SSU proteome 0.11 Archaeplastida
LOC_Os03g13170.1 No alias component RPL40 of LSU proteome component 0.05 Archaeplastida
LOC_Os05g06770.1 No alias component RPS27a of SSU proteome 0.05 Archaeplastida
LOC_Os09g39500.1 No alias component RPL40 of LSU proteome component 0.13 Archaeplastida
MA_10435699g0020 No alias component RPS27a of SSU proteome 0.07 Archaeplastida
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.13 Archaeplastida
MA_529552g0010 No alias component RPS27a of SSU proteome 0.14 Archaeplastida
MA_9129425g0010 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
Mp7g12490.1 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
Mp7g12760.1 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.17 Archaeplastida
Pp3c10_25270V3.1 No alias ubiquitin extension protein 1 0.2 Archaeplastida
Pp3c12_5640V3.1 No alias ubiquitin 6 0.15 Archaeplastida
Pp3c12_5760V3.1 No alias ubiquitin 6 0.23 Archaeplastida
Pp3c20_23170V3.1 No alias ubiquitin extension protein 1 0.2 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.12 Archaeplastida
Pp3c3_25480V3.1 No alias ubiquitin extension protein 1 0.15 Archaeplastida
Pp3c4_11930V3.1 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.11 Archaeplastida
Pp3c4_19000V3.1 No alias ubiquitin 6 0.19 Archaeplastida
Pp3c8_14230V3.1 No alias ubiquitin 6 0.15 Archaeplastida
Smo111605 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Smo93613 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Zm00001e000962_P001 No alias component RPL40 of LSU proteome component 0.11 Archaeplastida
Zm00001e009474_P001 No alias component RPL40 of LSU proteome component 0.14 Archaeplastida
Zm00001e026237_P001 No alias component RPS27a of SSU proteome 0.14 Archaeplastida
Zm00001e028916_P001 No alias component RPS27a of SSU proteome 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004017 adenylate kinase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050145 nucleoside monophosphate kinase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!