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  5. Solyc01g102690.4.1

Solyc01g102690.4.1


Description : Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana (sp|q9m2y7|pp274_arath : 929.0)


Gene families : OG0011485 (Archaeplastida) Phylogenetic Tree(s): OG0011485_tree ,
OG_05_0007382 (LandPlants) Phylogenetic Tree(s): OG_05_0007382_tree ,
OG_06_0002470 (SeedPlants) Phylogenetic Tree(s): OG_06_0002470_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g102690.4.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00261060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49710... 0.05 Archaeplastida
MA_7379g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 584 710
IPR002885 Pentatricopeptide_repeat 384 409
IPR002885 Pentatricopeptide_repeat 108 137
IPR002885 Pentatricopeptide_repeat 555 579
IPR002885 Pentatricopeptide_repeat 179 202
IPR002885 Pentatricopeptide_repeat 77 102
IPR002885 Pentatricopeptide_repeat 484 508
IPR002885 Pentatricopeptide_repeat 208 236
IPR002885 Pentatricopeptide_repeat 410 457
IPR002885 Pentatricopeptide_repeat 307 353
No external refs found!