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Description : Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana (sp|q9fmg4|sc35_arath : 168.0)
Gene families : OG0001859 (Archaeplastida) Phylogenetic Tree(s): OG0001859_tree ,
OG_05_0001512 (LandPlants) Phylogenetic Tree(s): OG_05_0001512_tree ,
OG_06_0001418 (SeedPlants) Phylogenetic Tree(s): OG_06_0001418_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc01g105140.3.1 | |
| Cluster | HCCA: Cluster_217 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G64200 | SC35, ATSC35, At-SC35 | ortholog of human splicing factor SC35 | 0.07 | Archaeplastida | |
| MA_10426661g0020 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.07 | Archaeplastida | |
| Mp3g22400.1 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.03 | Archaeplastida | |
| Pp3c1_31280V3.1 | No alias | ortholog of human splicing factor SC35 | 0.06 | Archaeplastida | |
| Zm00001e003406_P005 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.02 | Archaeplastida | |
| Zm00001e024321_P003 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.04 | Archaeplastida | |
| Zm00001e035587_P001 | No alias | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... | 0.09 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| CC | GO:0016592 | mediator complex | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 18 | 87 |
| No external refs found! |