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  5. Solyc01g107320.3.1

Solyc01g107320.3.1


Description : plastidial mRNA processing factor (PPR10)


Gene families : OG0002673 (Archaeplastida) Phylogenetic Tree(s): OG0002673_tree ,
OG_05_0001952 (LandPlants) Phylogenetic Tree(s): OG_05_0001952_tree ,
OG_06_0001479 (SeedPlants) Phylogenetic Tree(s): OG_06_0001479_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g107320.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 Archaeplastida
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.06 Archaeplastida
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.06 Archaeplastida
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009235 cobalamin metabolic process IEP Neighborhood
BP GO:0009236 cobalamin biosynthetic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 303 361
IPR002885 Pentatricopeptide_repeat 621 676
IPR002885 Pentatricopeptide_repeat 196 258
IPR002885 Pentatricopeptide_repeat 373 434
IPR002885 Pentatricopeptide_repeat 442 501
IPR002885 Pentatricopeptide_repeat 524 573
IPR002885 Pentatricopeptide_repeat 699 745
IPR002885 Pentatricopeptide_repeat 765 794
No external refs found!