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  5. Solyc02g005480.4.1

Solyc02g005480.4.1


Description : E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana (sp|q9lt17|bbr_arath : 88.2)


Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0001074 (LandPlants) Phylogenetic Tree(s): OG_05_0001074_tree ,
OG_06_0000731 (SeedPlants) Phylogenetic Tree(s): OG_06_0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g005480.4.1
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00244030 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00046p00058640 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 Archaeplastida
AT5G24870 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G52140 No alias RING/U-box superfamily protein 0.02 Archaeplastida
LOC_Os04g55510.1 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 Archaeplastida
LOC_Os09g36460.1 No alias E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e006754_P001 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 Archaeplastida
Zm00001e032327_P003 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 Archaeplastida
Zm00001e034827_P002 No alias E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!