Solyc02g071730.4.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0001300 (SeedPlants) Phylogenetic Tree(s): OG_06_0001300_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g071730.4.1
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00267050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00013p00120040	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00017p00244900	evm_27.TU.AmTr_v1...	Floral homeotic protein PMADS 2 OS=Petunia hybrida	0.03	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.04	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT5G60440	AGL62	AGAMOUS-like 62	0.03	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.06	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01012249001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01015649001	No alias	No description available	0.03	Archaeplastida
GSVIVT01037026001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Gb_12778	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.02	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	Archaeplastida
MA_19387g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_20467g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_20467g0020	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.04	Archaeplastida
MA_211156g0010	No alias	no description available(sp\|q93xh4\|mads1_vitvi : 152.0)	0.06	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_78010g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Mp4g11760.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Pp3c4_3820V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Pp3c4_540V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e011470_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e015728_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e032487_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	101	187
IPR002100	TF_MADSbox	26	73

External Links

No external refs found!

Solyc02g071730.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation