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  5. AMTR_s00022p00238440

AMTR_s00022p00238440 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.334

Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit


Gene families : OG0003156 (Archaeplastida) Phylogenetic Tree(s): OG0003156_tree ,
OG_05_0003042 (LandPlants) Phylogenetic Tree(s): OG_05_0003042_tree ,
OG_06_0003893 (SeedPlants) Phylogenetic Tree(s): OG_06_0003893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00238440
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AT4G31480 No alias Coatomer, beta subunit 0.11 Archaeplastida
AT4G31490 No alias Coatomer, beta subunit 0.1 Archaeplastida
Cpa|evm.model.tig00020553.156 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Cre04.g217921 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 Archaeplastida
GSVIVT01035511001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.08 Archaeplastida
Gb_03760 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
Gb_23100 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
LOC_Os01g17430.1 No alias subunit beta of cargo adaptor F-subcomplex 0.04 Archaeplastida
LOC_Os11g07280.1 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
MA_10431517g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
MA_230138g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.05 Archaeplastida
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
Pp3c25_10770V3.1 No alias Coatomer, beta subunit 0.06 Archaeplastida
Pp3c6_720V3.1 No alias Coatomer, beta subunit 0.06 Archaeplastida
Pp3c7_8430V3.1 No alias Coatomer, beta subunit 0.09 Archaeplastida
Smo160340 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
Solyc01g007150.3.1 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
Solyc10g081920.2.1 No alias subunit beta of cargo adaptor F-subcomplex 0.07 Archaeplastida
Zm00001e009041_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.06 Archaeplastida
Zm00001e017416_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.13 Archaeplastida
Zm00001e025465_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005798 Golgi-associated vesicle IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 20 471
IPR011710 Coatomer_bsu_C 674 948
No external refs found!