Solyc02g082010.3.1

Description : transcription factor (mTERF)

Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g082010.3.1
Cluster	HCCA: Cluster_219

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00114980	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00117910	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00225110	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00066p00157030	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00066p00157220	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00084p00087230	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00126p00036100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.06	Archaeplastida
AMTR_s00126p00036130	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036170	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00126p00036560	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
Gb_00751	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_03684	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Gb_07257	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.03	Archaeplastida
Gb_14091	No alias	transcription factor (mTERF)	0.07	Archaeplastida
Gb_15878	No alias	transcription factor (mTERF)	0.05	Archaeplastida
Gb_26176	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_31439	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os02g51450.2	No alias	transcription factor (mTERF)	0.02	Archaeplastida
LOC_Os04g54510.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
LOC_Os05g33440.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
LOC_Os05g33460.2	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os05g34160.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
LOC_Os06g12070.1	No alias	transcription factor (mTERF)	0.05	Archaeplastida
LOC_Os07g24090.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
LOC_Os11g14130.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_10429074g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_122549g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_2589g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_278493g0010	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_31885g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_493420g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_7539255g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_8256677g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_92135g0010	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Solyc04g072500.1.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
CC	GO:0005779	integral component of peroxisomal membrane	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006188	IMP biosynthetic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006887	exocytosis	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007031	peroxisome organization	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016409	palmitoyltransferase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016778	diphosphotransferase activity	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
CC	GO:0031231	intrinsic component of peroxisomal membrane	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031301	integral component of organelle membrane	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044438	microbody part	IEP	Neighborhood
CC	GO:0044439	peroxisomal part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046040	IMP metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	201	353
IPR003690	MTERF	79	232

External Links

No external refs found!

Solyc02g082010.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation