Solyc02g082220.3.1

Description : component Sec24 of Sec23/24 cargo adaptor subcomplex

Gene families : OG0001187 (Archaeplastida) Phylogenetic Tree(s): OG0001187_tree ,
OG_05_0003933 (LandPlants) Phylogenetic Tree(s): OG_05_0003933_tree ,
OG_06_0005426 (SeedPlants) Phylogenetic Tree(s): OG_06_0005426_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g082220.3.1
Cluster	HCCA: Cluster_158

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00084390	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.08	Archaeplastida
AMTR_s00071p00045940	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.06	Archaeplastida
AT3G07100	ERMO2, SEC24A	Sec23/Sec24 protein transport family protein	0.07	Archaeplastida
AT3G44340	CEF	clone eighty-four	0.07	Archaeplastida
AT4G32640	No alias	Sec23/Sec24 protein transport family protein	0.07	Archaeplastida
Cpa\|evm.model.tig00000829.3	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	Archaeplastida
Cre02.g091150	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	Archaeplastida
GSVIVT01014261001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.1	Archaeplastida
GSVIVT01014611001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.09	Archaeplastida
Gb_11357	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.04	Archaeplastida
Gb_26869	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.02	Archaeplastida
Gb_38621	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.05	Archaeplastida
LOC_Os04g04020.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.07	Archaeplastida
LOC_Os11g29200.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.04	Archaeplastida
LOC_Os12g24250.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.07	Archaeplastida
MA_10430919g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.1	Archaeplastida
MA_10434705g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.05	Archaeplastida
MA_45050g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.03	Archaeplastida
MA_923164g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.06	Archaeplastida
Mp7g13350.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.02	Archaeplastida
Mp7g13560.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.08	Archaeplastida
Pp3c1_17880V3.1	No alias	Sec23/Sec24 protein transport family protein	0.03	Archaeplastida
Pp3c1_22750V3.1	No alias	Sec23/Sec24 protein transport family protein	0.02	Archaeplastida
Pp3c1_22900V3.1	No alias	clone eighty-four	0.06	Archaeplastida
Pp3c2_16660V3.1	No alias	Sec23/Sec24 protein transport family protein	0.04	Archaeplastida
Smo140536	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.06	Archaeplastida
Zm00001e008766_P001	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.17	Archaeplastida
Zm00001e021459_P002	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.09	Archaeplastida
Zm00001e040573_P001	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.14	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
CC	GO:0017119	Golgi transport complex	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Neighborhood
CC	GO:0030126	COPI vesicle coat	IEP	Neighborhood
CC	GO:0030131	clathrin adaptor complex	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006900	Sec23/24_helical_dom	792	895
IPR007123	Gelsolin-like_dom	924	987
IPR006895	Znf_Sec23_Sec24	380	418
IPR006896	Sec23/24_trunk_dom	455	691
IPR012990	Sec23_24_beta_S	697	780

External Links

No external refs found!

Solyc02g082220.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation