Solyc02g084630.3.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0010514 (LandPlants) Phylogenetic Tree(s): OG_05_0010514_tree ,
OG_06_0010116 (SeedPlants) Phylogenetic Tree(s): OG_06_0010116_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g084630.3.1
Cluster	HCCA: Cluster_208

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00010p00214260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00013p00120040	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00017p00244900	evm_27.TU.AmTr_v1...	Floral homeotic protein PMADS 2 OS=Petunia hybrida	0.02	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00071p00198520	evm_27.TU.AmTr_v1...	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT1G72350	No alias	MADS-box transcription factor family protein	0.01	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.05	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.03	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.02	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G60440	AGL62	AGAMOUS-like 62	0.05	Archaeplastida
AT5G62165	AGL42	AGAMOUS-like 42	0.02	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01014093001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01021534001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01022182001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01037024001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os04g23910.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os04g52410.2	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g01890.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os08g38590.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10289256g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_69370g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.03	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.03	Archaeplastida
Pp3c3_31770V3.1	No alias	AGAMOUS-like 104	0.03	Archaeplastida
Pp3c9_1370V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc08g080100.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e038096_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Neighborhood
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006751	glutathione catabolic process	IEP	Neighborhood
BP	GO:0007050	cell cycle arrest	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Neighborhood
BP	GO:0043171	peptide catabolic process	IEP	Neighborhood
BP	GO:0044273	sulfur compound catabolic process	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	83	165
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc02g084630.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation