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  5. Solyc02g087360.4.1

Solyc02g087360.4.1


Description : component SNL of histone deacetylase machineries


Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0001649 (LandPlants) Phylogenetic Tree(s): OG_05_0001649_tree ,
OG_06_0003070 (SeedPlants) Phylogenetic Tree(s): OG_06_0003070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g087360.4.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.03 Archaeplastida
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.12 Archaeplastida
AT1G70060 SNL4 SIN3-like 4 0.02 Archaeplastida
AT3G01320 SNL1 SIN3-like 1 0.15 Archaeplastida
AT5G15020 SNL2 SIN3-like 2 0.1 Archaeplastida
Cpa|evm.model.tig00001155.28 No alias Paired amphipathic helix protein Sin3-like 1... 0.01 Archaeplastida
Cre03.g180800 No alias Paired amphipathic helix protein Sin3-like 4... 0.02 Archaeplastida
GSVIVT01020136001 No alias Chromatin organisation.histone modifications.histone... 0.11 Archaeplastida
GSVIVT01032579001 No alias Chromatin organisation.histone modifications.histone... 0.09 Archaeplastida
Gb_35988 No alias component SNL of histone deacetylase machineries 0.05 Archaeplastida
LOC_Os05g01020.2 No alias component SNL of histone deacetylase machineries 0.11 Archaeplastida
MA_18241g0010 No alias component SNL of histone deacetylase machineries 0.09 Archaeplastida
Mp3g02880.1 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
Mp7g11300.1 No alias Paired amphipathic helix protein Sin3-like 2... 0.02 Archaeplastida
Pp3c24_13770V3.1 No alias SIN3-like 3 0.09 Archaeplastida
Pp3c24_16180V3.1 No alias SIN3-like 4 0.05 Archaeplastida
Pp3c24_19330V3.1 No alias SIN3-like 4 0.05 Archaeplastida
Pp3c8_14940V3.1 No alias SIN3-like 4 0.06 Archaeplastida
Pp3c8_17710V3.1 No alias SIN3-like 2 0.02 Archaeplastida
Smo440352 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Zm00001e017111_P002 No alias component SNL of histone deacetylase machineries 0.13 Archaeplastida
Zm00001e025644_P001 No alias component SNL of histone deacetylase machineries 0.09 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003822 PAH 156 200
IPR003822 PAH 356 398
IPR003822 PAH 72 116
IPR013194 HDAC_interact_dom 466 557
IPR031693 Sin3_C 1062 1309
No external refs found!