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  5. AMTR_s00023p00210590

AMTR_s00023p00210590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.154

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component


Gene families : OG0002429 (Archaeplastida) Phylogenetic Tree(s): OG0002429_tree ,
OG_05_0002329 (LandPlants) Phylogenetic Tree(s): OG_05_0002329_tree ,
OG_06_0002237 (SeedPlants) Phylogenetic Tree(s): OG_06_0002237_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00023p00210590
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AT3G09630 No alias Ribosomal protein L4/L1 family 0.18 Archaeplastida
AT5G02870 No alias Ribosomal protein L4/L1 family 0.23 Archaeplastida
Cpa|evm.model.tig00022075.53 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Cre09.g397697 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
GSVIVT01025547001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Gb_00290 No alias component RPL4 of LSU proteome component 0.02 Archaeplastida
LOC_Os03g58204.1 No alias component RPL4 of LSU proteome component 0.18 Archaeplastida
LOC_Os07g08330.1 No alias component RPL4 of LSU proteome component 0.18 Archaeplastida
MA_9991417g0010 No alias component RPL4 of LSU proteome component 0.12 Archaeplastida
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.2 Archaeplastida
Pp3c20_19140V3.1 No alias Ribosomal protein L4/L1 family 0.07 Archaeplastida
Pp3c23_6290V3.1 No alias Ribosomal protein L4/L1 family 0.08 Archaeplastida
Pp3c23_9380V3.1 No alias Ribosomal protein L4/L1 family 0.11 Archaeplastida
Pp3c24_3760V3.1 No alias Ribosomal protein L4/L1 family 0.11 Archaeplastida
Solyc09g007250.4.1 No alias component RPL4 of LSU proteome component 0.17 Archaeplastida
Solyc10g084350.2.1 No alias component RPL4 of LSU proteome component 0.2 Archaeplastida
Solyc10g086010.2.1 No alias component RPL4 of LSU proteome component 0.12 Archaeplastida
Zm00001e005988_P001 No alias component RPL4 of LSU proteome component 0.15 Archaeplastida
Zm00001e011456_P002 No alias component RPL4 of LSU proteome component 0.1 Archaeplastida
Zm00001e011869_P001 No alias component RPL4 of LSU proteome component 0.09 Archaeplastida
Zm00001e032938_P001 No alias component RPL4 of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 29 269
IPR025755 Ribos_L4_C_dom 283 360
No external refs found!