Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.154
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component
Gene families : OG0002429 (Archaeplastida) Phylogenetic Tree(s): OG0002429_tree ,
OG_05_0002329 (LandPlants) Phylogenetic Tree(s): OG_05_0002329_tree ,
OG_06_0002237 (SeedPlants) Phylogenetic Tree(s): OG_06_0002237_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00023p00210590 | |
Cluster | HCCA: Cluster_245 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G09630 | No alias | Ribosomal protein L4/L1 family | 0.18 | Archaeplastida | |
AT5G02870 | No alias | Ribosomal protein L4/L1 family | 0.23 | Archaeplastida | |
Cpa|evm.model.tig00022075.53 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.14 | Archaeplastida | |
Cre09.g397697 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.13 | Archaeplastida | |
GSVIVT01025547001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.1 | Archaeplastida | |
Gb_00290 | No alias | component RPL4 of LSU proteome component | 0.02 | Archaeplastida | |
LOC_Os03g58204.1 | No alias | component RPL4 of LSU proteome component | 0.18 | Archaeplastida | |
LOC_Os07g08330.1 | No alias | component RPL4 of LSU proteome component | 0.18 | Archaeplastida | |
MA_9991417g0010 | No alias | component RPL4 of LSU proteome component | 0.12 | Archaeplastida | |
Mp4g20310.1 | No alias | component RPL4 of LSU proteome component | 0.2 | Archaeplastida | |
Pp3c20_19140V3.1 | No alias | Ribosomal protein L4/L1 family | 0.07 | Archaeplastida | |
Pp3c23_6290V3.1 | No alias | Ribosomal protein L4/L1 family | 0.08 | Archaeplastida | |
Pp3c23_9380V3.1 | No alias | Ribosomal protein L4/L1 family | 0.11 | Archaeplastida | |
Pp3c24_3760V3.1 | No alias | Ribosomal protein L4/L1 family | 0.11 | Archaeplastida | |
Solyc09g007250.4.1 | No alias | component RPL4 of LSU proteome component | 0.17 | Archaeplastida | |
Solyc10g084350.2.1 | No alias | component RPL4 of LSU proteome component | 0.2 | Archaeplastida | |
Solyc10g086010.2.1 | No alias | component RPL4 of LSU proteome component | 0.12 | Archaeplastida | |
Zm00001e005988_P001 | No alias | component RPL4 of LSU proteome component | 0.15 | Archaeplastida | |
Zm00001e011456_P002 | No alias | component RPL4 of LSU proteome component | 0.1 | Archaeplastida | |
Zm00001e011869_P001 | No alias | component RPL4 of LSU proteome component | 0.09 | Archaeplastida | |
Zm00001e032938_P001 | No alias | component RPL4 of LSU proteome component | 0.08 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
CC | GO:0005622 | intracellular | IEP | Neighborhood |
CC | GO:0005759 | mitochondrial matrix | IEP | Neighborhood |
CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006414 | translational elongation | IEP | Neighborhood |
BP | GO:0006605 | protein targeting | IEP | Neighborhood |
BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
CC | GO:0015934 | large ribosomal subunit | IEP | Neighborhood |
CC | GO:0016272 | prefoldin complex | IEP | Neighborhood |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | Neighborhood |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Neighborhood |
MF | GO:0033218 | amide binding | IEP | Neighborhood |
BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
MF | GO:0042277 | peptide binding | IEP | Neighborhood |
CC | GO:0043233 | organelle lumen | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
CC | GO:0044391 | ribosomal subunit | IEP | Neighborhood |
BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
CC | GO:0070013 | intracellular organelle lumen | IEP | Neighborhood |
BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No external refs found! |