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  5. Solyc03g033310.4.1

Solyc03g033310.4.1


Description : Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana (sp|q84th4|sr45a_arath : 101.0)


Gene families : OG0001100 (Archaeplastida) Phylogenetic Tree(s): OG0001100_tree ,
OG_05_0001443 (LandPlants) Phylogenetic Tree(s): OG_05_0001443_tree ,
OG_06_0001574 (SeedPlants) Phylogenetic Tree(s): OG_06_0001574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g033310.4.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.146 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
GSVIVT01019390001 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida
Gb_20180 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
LOC_Os03g15890.1 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida
LOC_Os08g29650.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
MA_112005g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_125930g0010 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
MA_89416g0010 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
Mp3g15540.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
Pp3c18_16140V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Zm00001e013302_P002 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 54 123
No external refs found!