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  4. Sequence
  5. Solyc03g114060.3.1

Solyc03g114060.3.1


Description : no hits & (original description: none)


Gene families : OG0001277 (Archaeplastida) Phylogenetic Tree(s): OG0001277_tree ,
OG_05_0002284 (LandPlants) Phylogenetic Tree(s): OG_05_0002284_tree ,
OG_06_0002463 (SeedPlants) Phylogenetic Tree(s): OG_06_0002463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g114060.3.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00111920 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.13 Archaeplastida
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.09 Archaeplastida
Cpa|evm.model.tig00001215.1 No alias No description available 0.01 Archaeplastida
GSVIVT01007806001 No alias No description available 0.09 Archaeplastida
GSVIVT01032521001 No alias No description available 0.09 Archaeplastida
Gb_02775 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_05690 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os02g50840.2 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os02g50850.2 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_10428034g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10432920g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_39143g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_39143g0020 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp4g16160.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g16230.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c11_22570V3.1 No alias BAH domain ;TFIIS helical bundle-like domain 0.09 Archaeplastida
Pp3c7_2900V3.1 No alias BAH domain ;TFIIS helical bundle-like domain 0.07 Archaeplastida
Smo440870 No alias No description available 0.03 Archaeplastida
Zm00001e002441_P003 No alias no hits & (original description: none) 0.23 Archaeplastida
Zm00001e037792_P001 No alias no hits & (original description: none) 0.17 Archaeplastida
Zm00001e037793_P001 No alias no hits & (original description: none) 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001025 BAH_dom 51 158
IPR017923 TFIIS_N 366 415
No external refs found!