Solyc03g114840.3.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000791 (SeedPlants) Phylogenetic Tree(s): OG_06_0000791_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g114840.3.1
Cluster	HCCA: Cluster_52

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00013p00103080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.08	Archaeplastida
AT1G26310	AGL10, CAL1, CAL	K-box region and MADS-box transcription factor family protein	0.09	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.02	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	Archaeplastida
AT5G62165	AGL42	AGAMOUS-like 42	0.05	Archaeplastida
Cre11.g467577	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01010218001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01037024001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Gb_05359	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_41550	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os01g66030.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os06g49840.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os07g01820.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
MA_15122g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_20180g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_20467g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_20467g0020	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.05	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_8748850g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_899014g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c12_22500V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e012024_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e015924_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	84	171
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc03g114840.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation