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  5. Solyc04g005690.4.1

Solyc04g005690.4.1


Description : component SF3A1 of splicing factor 3A complex


Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree ,
OG_05_0003043 (LandPlants) Phylogenetic Tree(s): OG_05_0003043_tree ,
OG_06_0004939 (SeedPlants) Phylogenetic Tree(s): OG_06_0004939_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g005690.4.1
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00096200 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AT1G14650 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.12 Archaeplastida
Cpa|evm.model.tig00021501.12 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre06.g307450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.08 Archaeplastida
Gb_03741 No alias component SF3A1 of splicing factor 3A complex 0.06 Archaeplastida
Gb_32888 No alias component SF3A1 of splicing factor 3A complex 0.03 Archaeplastida
LOC_Os02g14780.2 No alias component SF3A1 of splicing factor 3A complex 0.04 Archaeplastida
MA_10432431g0010 No alias component SF3A1 of splicing factor 3A complex 0.06 Archaeplastida
Mp6g07670.1 No alias component SF3A1 of splicing factor 3A complex 0.03 Archaeplastida
Pp3c18_11660V3.1 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.04 Archaeplastida
Pp3c23_15260V3.1 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.03 Archaeplastida
Zm00001e017307_P001 No alias component SF3A1 of splicing factor 3A complex 0.05 Archaeplastida
Zm00001e025538_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000061 Surp 190 241
IPR000061 Surp 70 119
IPR000626 Ubiquitin_dom 731 798
IPR022030 SF3A1 260 475
No external refs found!