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  5. AMTR_s00025p00060270

AMTR_s00025p00060270 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.37

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor


Gene families : OG0001159 (Archaeplastida) Phylogenetic Tree(s): OG0001159_tree ,
OG_05_0001847 (LandPlants) Phylogenetic Tree(s): OG_05_0001847_tree ,
OG_06_0001563 (SeedPlants) Phylogenetic Tree(s): OG_06_0001563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00060270
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011061001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_36311 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.07 Archaeplastida
MA_15876g0010 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.03 Archaeplastida
Pp3c1_25410V3.1 No alias Mitochondrial transcription termination factor family protein 0.02 Archaeplastida
Zm00001e032771_P001 No alias transcription factor (mTERF) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 128 472
No external refs found!