Solyc04g082070.4.1

Description : tRNA pseudouridine synthase (TruA)

Gene families : OG0004432 (Archaeplastida) Phylogenetic Tree(s): OG0004432_tree ,
OG_05_0004946 (LandPlants) Phylogenetic Tree(s): OG_05_0004946_tree ,
OG_06_0007540 (SeedPlants) Phylogenetic Tree(s): OG_06_0007540_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g082070.4.1
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os02g44810.1	No alias	tRNA pseudouridine synthase (TruA)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
CC	GO:0031390	Ctf18 RFC-like complex	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	208	275

External Links

No external refs found!

Solyc04g082070.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation