1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g005780.3.1

Solyc05g005780.3.1


Description : large subunit gamma of AP-1 trans-Golgi network cargo adaptor complex


Gene families : OG0003646 (Archaeplastida) Phylogenetic Tree(s): OG0003646_tree ,
OG_05_0003827 (LandPlants) Phylogenetic Tree(s): OG_05_0003827_tree ,
OG_06_0004999 (SeedPlants) Phylogenetic Tree(s): OG_06_0004999_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g005780.3.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT1G23900 GAMMA-ADAPTIN 1,... gamma-adaptin 1 0.06 Archaeplastida
AT1G60070 No alias Adaptor protein complex AP-1, gamma subunit 0.07 Archaeplastida
Cpa|evm.model.tig00000217.33 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 Archaeplastida
Cre16.g676650 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.08 Archaeplastida
GSVIVT01020209001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.18 Archaeplastida
Gb_02741 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.14 Archaeplastida
LOC_Os02g56110.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.08 Archaeplastida
LOC_Os06g07090.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.15 Archaeplastida
Mp2g02140.1 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.12 Archaeplastida
Pp3c17_4870V3.1 No alias Adaptor protein complex AP-1, gamma subunit 0.08 Archaeplastida
Pp3c26_590V3.1 No alias Adaptor protein complex AP-1, gamma subunit 0.08 Archaeplastida
Smo168054 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.11 Archaeplastida
Zm00001e023661_P002 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.09 Archaeplastida
Zm00001e030101_P002 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.16 Archaeplastida
Zm00001e036396_P001 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.14 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 762 876
IPR002553 Clathrin/coatomer_adapt-like_N 27 578
No external refs found!