Solyc05g007810.3.1

Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 154.0)

Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0003295 (SeedPlants) Phylogenetic Tree(s): OG_06_0003295_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g007810.3.1
Cluster	HCCA: Cluster_202

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00265700	evm_27.TU.AmTr_v1...	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
AT2G22600	No alias	RNA-binding KH domain-containing protein	0.03	Archaeplastida
GSVIVT01011439001	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
GSVIVT01012514001	No alias	KH domain-containing protein HEN4 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01031037001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.07	Archaeplastida
Gb_03724	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Gb_31686	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
Gb_38220	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
LOC_Os06g23460.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
MA_10430861g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
MA_3715g0020	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
MA_6622g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
MA_71572g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.02	Archaeplastida
Pp3c14_13560V3.1	No alias	RNA-binding KH domain-containing protein	0.02	Archaeplastida
Solyc04g077060.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
Zm00001e004486_P005	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e026127_P004	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Zm00001e037033_P001	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Zm00001e037947_P004	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e039986_P003	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006470	protein dephosphorylation	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0017025	TBP-class protein binding	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	357	421
IPR004088	KH_dom_type_1	46	98
IPR004088	KH_dom_type_1	274	322
IPR004088	KH_dom_type_1	140	208

External Links

No external refs found!

Solyc05g007810.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation