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  5. Solyc05g013200.1.1

Solyc05g013200.1.1


Description : RNA editing factor (OTP85)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g013200.1.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.06 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.07 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.06 Archaeplastida
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.03 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01000086001 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.05 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.03 Archaeplastida
GSVIVT01008537001 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.05 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.06 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01009407001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.07 Archaeplastida
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.06 Archaeplastida
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.04 Archaeplastida
GSVIVT01012201001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
GSVIVT01015087001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
GSVIVT01015466001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.02 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
GSVIVT01031733001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.05 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
Gb_20910 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_21430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.06 Archaeplastida
Gb_21824 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Gb_33718 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.04 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.03 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.04 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.06 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.06 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.07 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.02 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.05 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
LOC_Os07g09370.1 No alias RNA editing factor (CRR28) 0.03 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_385322g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_43497g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_653417g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_82569g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo108652 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo111075 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo131170 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Smo85415 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo87961 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo88824 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo90123 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.03 Archaeplastida
Smo98955 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.04 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Zm00001e015517_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.06 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e034445_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006188 IMP biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019627 urea metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043419 urea catabolic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043605 cellular amide catabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046040 IMP metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071941 nitrogen cycle metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 470 595
IPR002885 Pentatricopeptide_repeat 300 325
IPR002885 Pentatricopeptide_repeat 372 394
IPR002885 Pentatricopeptide_repeat 335 362
IPR002885 Pentatricopeptide_repeat 271 294
IPR002885 Pentatricopeptide_repeat 443 466
IPR002885 Pentatricopeptide_repeat 195 241
No external refs found!