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  5. Solyc05g015930.4.1

Solyc05g015930.4.1


Description : no hits & (original description: none)


Gene families : OG0001571 (Archaeplastida) Phylogenetic Tree(s): OG0001571_tree ,
OG_05_0002272 (LandPlants) Phylogenetic Tree(s): OG_05_0002272_tree ,
OG_06_0003762 (SeedPlants) Phylogenetic Tree(s): OG_06_0003762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g015930.4.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AT1G24300 No alias GYF domain-containing protein 0.03 Archaeplastida
AT1G27430 No alias GYF domain-containing protein 0.04 Archaeplastida
GSVIVT01000921001 No alias No description available 0.04 Archaeplastida
GSVIVT01000922001 No alias No description available 0.08 Archaeplastida
GSVIVT01009695001 No alias No description available 0.03 Archaeplastida
GSVIVT01033051001 No alias No description available 0.11 Archaeplastida
LOC_Os01g69990.1 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10117g0030 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10425836g0010 No alias susceptibility factor (EXA1) 0.06 Archaeplastida
MA_10425836g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_37559g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp8g07340.1 No alias susceptibility factor (EXA1) 0.03 Archaeplastida
Pp3c12_12950V3.1 No alias GYF domain-containing protein 0.08 Archaeplastida
Pp3c12_13780V3.1 No alias GYF domain-containing protein 0.09 Archaeplastida
Pp3c4_9300V3.1 No alias GYF domain-containing protein 0.03 Archaeplastida
Smo438556 No alias No description available 0.03 Archaeplastida
Smo438614 No alias No description available 0.03 Archaeplastida
Zm00001e028423_P003 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e028424_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003169 GYF 218 259
No external refs found!