1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g052610.3.1

Solyc05g052610.3.1


Description : transcription factor (MYB-related)


Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0000498 (LandPlants) Phylogenetic Tree(s): OG_05_0000498_tree ,
OG_06_0000376 (SeedPlants) Phylogenetic Tree(s): OG_06_0000376_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g052610.3.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00040070 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00045p00096080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AT3G10590 No alias Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT4G36570 ATRL3, RL3 RAD-like 3 0.04 Archaeplastida
AT5G05790 No alias Duplicated homeodomain-like superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00000455.6 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01016370001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
GSVIVT01016996001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01024794001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
LOC_Os01g09640.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os01g64360.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os05g10690.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
LOC_Os05g37730.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
MA_209399g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_6326342g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Smo130556 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Solyc03g113620.3.1 No alias transcription factor (MYB-related) 0.07 Archaeplastida
Solyc03g119740.3.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Solyc04g005100.3.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Solyc04g008870.3.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Solyc04g080500.3.1 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Solyc07g026680.2.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Solyc12g008800.3.1 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Zm00001e016939_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e019254_P001 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Zm00001e020381_P001 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Zm00001e020633_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e025783_P002 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e025784_P001 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Zm00001e025946_P002 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e027835_P005 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Zm00001e028729_P001 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Zm00001e031755_P001 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Zm00001e032519_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e038565_P001 No alias transcription factor (MYB-related) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0009143 nucleoside triphosphate catabolic process IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 123 167
IPR001005 SANT/Myb 25 69
No external refs found!