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  5. Solyc05g053130.3.1

Solyc05g053130.3.1


Description : no hits & (original description: none)


Gene families : OG0003461 (Archaeplastida) Phylogenetic Tree(s): OG0003461_tree ,
OG_05_0004061 (LandPlants) Phylogenetic Tree(s): OG_05_0004061_tree ,
OG_06_0005030 (SeedPlants) Phylogenetic Tree(s): OG_06_0005030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g053130.3.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G04140 No alias Transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Cre16.g655400 No alias No description available 0.03 Archaeplastida
GSVIVT01028455001 No alias No description available 0.03 Archaeplastida
Gb_28988 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10428045g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp7g08660.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c10_9370V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Pp3c14_5930V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Smo413471 No alias No description available 0.02 Archaeplastida
Zm00001e008565_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e009644_P003 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 137 176
IPR001680 WD40_repeat 110 133
No external refs found!